Install r studio libraries
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- INSTALL R STUDIO LIBRARIES HOW TO
- INSTALL R STUDIO LIBRARIES INSTALL
- INSTALL R STUDIO LIBRARIES CODE
For unstable code there are no guarantees. This version is a “live” incrementally updated version of the package that we use to save, share, and collaboratively develop the package. This delay is for stability, testing, and because Bioconductor is on a semi-annual release schedule. If you’ve requested a fix or feature on the phyloseq Issue Tracker, it will show up in this version first, and might be a while before the changes migrate to the official release version. This version is updated often, sometimes daily, and includes the latest fixes, documentation, and features. The second line installed the latest devel version of phyloseq on Bioconductor, by modifying one of the arguments to install_phyloseq() When executed, the first line called the latest installer script including a default-arguments call of install_phyloseq(), which installs the release version of phyloseq from precompiled binaries for your specific operating system, and any missing or out-of-date dependencies. If it works you will already have the stable version of phyloseq installed as well as updated versions of the packages on which it depends, but this section is about installing the latest devel version. This is an easy way of installing the stable dependencies for phyloseq while also making sure there are no other strange problems. This is actually pretty easy.įirst let’s follow the previous instructions for installing the stable release version of phyloseq, shown again here. I recommend installing the stable release versions of all the packages on which phyloseq depends, especially the whichever version is explicitly listed in the DESCRIPTION file. This is overkill if you only want to use the devel version of phyloseq, but not necessarily the devel version of all other packages in Bioconductor. However, using their tool, especially the useDevel() command, appears to force you to use development versions of all your Bioconductor packages. There are official instructions for using development versions of Bioconductor packages, and these will apply to phyloseq as well as any other package in the BioC-devel repository.
INSTALL R STUDIO LIBRARIES INSTALL
For example, Mac users probably want to install the MacTeX distro of LateX2e prior to any attempts at installing phyloseq from GitHub, as described in more detail in Issue 174. Although the commands for doing this are straightforward and shown below, one dependency that is often missed by users is LaTeX2e. Special Note When installing a recent (“devel”) version of the phyloseq package from GitHub or Bioconductor, you may need to “install from source”. If your package version number is behind and the tutorial does not work as expected for you, please consider installing the latest devel version of phyloseq from GitHub, described below. Typically the version used in the tutorial is shown at the top of the page. Lastly, check that the phyloseq version that you have installed matches well with what is shown in the tutorial you want to emulate. See if you can install all of the required packages ahead of time before attempting to install phyloseq. Some of the issues might depend on your system. If not, see some of the additional troubleshooting recommendations below. The phyloseq package has been installed and you can move on to the phyloseq tutorials. If one of the following methods in this section works with no errors, then you’re done.
INSTALL R STUDIO LIBRARIES HOW TO
It includes details for navigating the various versions of the package that are available, and how to tackle some of the challenges that may come up depending on your operating system and familiarity with R. The following tutorial contains information for installing the phyloseq package for R.